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test this about site map how to cite help home search blast sybil go term finder go slim mapper text search primers patmatch advanced search jbrowse or genomeview retrieve reads gbrowse a. nidulans a. fumigatus a. niger a. oryzae sequence gene/seq resources patmatch primers genome versions chromosome history download sequence go what is go? go slim mapper go term finder go consortium go file downloads tools batch download phenotypes sybil retrieve reads a. nidulans genome snapshot a. fumigatus genome snapshot a. niger genome snapshot a. oryzae genome snapshot literature highlighted topics laboratory strains and lineage download batch download go annotations chromosomal features sequence datasets browse downloads community search aspgd colleagues find aspergillus labs colleague update community news job opportunities meetings & courses nomenclature guide external resources images and movies methods and protocols about aspgd aspgd is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus aspergillus . among its many species, the genus contains an excellent model organism ( a. nidulans , or its teleomorph emericella nidulans ), an important pathogen of the immunocompromised ( a. fumigatus ), an agriculturally important toxin producer ( a. flavus ), and two species used in industrial processes ( a. niger and a. oryzae ). aspgd contains information about genes and proteins of multiple aspergillus species; descriptions and classifications of their biological roles, molecular functions, and subcellular localizations; gene, protein, and chromosome sequence information; tools for analysis and comparison of sequences; and links to literature information; as well as a multispecies comparative genomics browser tool (sybil) for exploration of orthology and synteny across multiple sequenced aspergillus species. upcoming meetings & courses 12th international aspergillus meeting (asperfest 12) asilomar conference grounds, pacific grove, california, usa march 16-17, 2015; registration deadline: december 10, 2014 28th fungal genetics conference asilomar conference grounds, pacific grove, california, usa march 17-22, 2015; registration deadline: december 10, 2014 molecular mycology: current approaches to fungal pathogenesis woods hole, massachusetts, usa june 14-30, 2015; application deadline: february 9, 2015 pyff6 - 6th conference on physiology of yeast and filamentous fungi lisbon, portugal july 11-14, 2016 new and noteworthy server maintenance tomorrow night the server hosting cgd and aspgd will need to go offline for maintenance around 7 pm (pacific time) tomorrow, october 21. the downtime should last about an hour. we apologize for the inconvenience. (posted october 20, 2015) -- title of item text of item here (posted date, 2012) -- aspergillus annotation updates the reference gene sets in aspgd have been updated, based on pasa analysis conducted by aspgd in 2015. the following changes were made: a. nidulans - 5 new features were added, and 4 former pseudogenes were reannotated as uncharachterized orfs; a. fumigatus - 2,473 features were affected: 59 new features were added; the sequences for 242 features were extended and 154 shortened; 4 features were merged to create 2 new features; 1,757 5-prime utrs and 1,333 3-prime utrs were added or modified; terminal exons were added to 313 features; the intron/exon structure was modified for 389 features; a. niger - two new features were added (an11g02363 and an17g02286); a. oryzae - 7,279 features were affected: 287 new features were added; the sequences for 706 features were extended and 192 shortened; 192 features were merged to create 93 new feature; 5,141 5-prime utrs and 5,213 3-prime utrs were added or modified; terminal exons were added to 897 features; the intron/exon structure was modified for 500 features. please, visit the chromosome history page to review the changes. (posted september 15, 2015) aspgd curation news a. nidulans genome snapshot a. fumigatus genome snapshot a. niger genome snapshot a. oryzae genome snapshot new papers added to aspgd this week. view genome-wide analysis papers in aspgd. aspgd and fungidb integration aspgd data are being integrated into fungidb. please click here for additional details. discussion of how to maximize the value of fungidb for the aspergillus research community will be a major topic at the upcoming asperfest12 meeting at asilomar (march 16-17, 2015). an open letter to the aspergillus research community on genome database resources: as many of you may already be aware, the nih r01 research grant that has supported development of the aspgd database will not be renewed … not because the nih doesn't appreciate the value and importance of this resource to the aspergillus research community, but because the current funding climate makes it difficult to support curation-intensive databases serving individual pathogens and relatively small research communities. however, nih has provided one year of funding to ensure that information from aspgd is integrated into fungidb , a component of the eupathdb bioinformatics resource center. we do not anticipate that aspgd will disappear: you should still be able to access the existing web site, at least for the foreseeable future, but curatorial engagement will have to be significantly reduced over the coming months. the eupathdb family of databases supports a wide range of microbial eukaryotes, including protozoan parasites and many fungal and oomycete species, including non-pathogens. this resource has been specifically designed to provide sustainable, cost-effective automated analysis of multiple genomes, integrating curated information where available, along with comments and supporting evidence from the user community (pubmedids, phenotypic information, images, datasets, etc). in addition to gene records, browser views, and data downloads, fungidb also provides a variety of sophisticated tools for integrating and mining diverse omics datasets, which we expect that aspergillus researchers and other fungal biologists will find quite useful. see sidebar on the fungidb web site for access to tutorials, videos, and exercises; more fungi-specific materials should become available over the coming months. aspgd and fungidb/eupathdb will be working together to maximize value to the aspergillus community, given the limited resources available. the upcoming asperfest12 and 28th fungal genetics meetings in asilomar (march 16-22, 2015) will be attended by staff from both groups, with presentations and a ‘help-desk’ to introduce the aspergillus community to fungidb . we look forward to productive discussions on how to ensure that aspergillus researchers retain access to information from aspgd, learn to use fungidb effectively and have a voice in its further development, and craft a strategy for meeting future informatics needs. jessica kissinger (univ georgia) - joint-pi, eupathdb michelle momany (univ georgia) - community liaison, aspgd & fungidb david roos (univ pennsylvania) - joint-pi, eupathdb; co-pi, fungidb gavin sherlock (stanford univ) - principal investigator, aspgd jason stajich (uc riverside) - principal investigator, fungidb jennifer wortman (broad inst) - co-pi, aspgd (posted february, 2015) sequence trace files available we have added archival aspergillus sequence data from the ncbi tracedb site, and these data are now available from our aspgd download site . (posted november 8, 2013) new "big 4" ortholog alignment we have added a new, streamlined, four-species protein alignment to the ortholog cluster pages in our sybil comparative genomics viewer. this "big 4" alignment displays a clustal protein alignment of the orthologs from a. nidulans fgsc a4, a. oryzae rib40, a. fumigatus af293 and a. niger cbs513.88 (see example ). as we continue to add new species into our sybil comparative genomics viewer, the number of proteins represented in each multispecies

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http://www.aspergillusgenome.org/strains.shtml
http://www.aspergillusgenome.org/gocontents.shtml
http://www.aspergillusgenome.org/communitynews.shtml
http://www.aspergillusgenome.org/cgi-bin/suggestion
http://www.aspergillusgenome.org/cgi-bin/genomeversionhistory.pl
http://www.aspergillusgenome.org/cgi-bin/gbrowse2/gbrowse/anig_cbs513_88/?start=759704;stop=764203;ref= an16_a_niger_cbs_513_88;width=800;version=100;flip=0;grid=1;id=161d0f8da5578cdc878e2f489577fc2c;l=all%1ejuly13% 1etranslation%1edna
http://www.aspergillusgenome.org/searchcontents.shtml#jbrowse
http://www.aspergillusgenome.org/meetings.shtml
http://www.aspergillusgenome.org/download/sequence/
http://www.aspergillusgenome.org/cgi-bin/seqtools
http://www.aspergillusgenome.org/cache/a_oryzae_rib40_genomesnapshot.html
http://www.aspergillusgenome.org/cgi-bin/compute/blast_clade.pl
http://www.aspergillusgenome.org/images.shtml
http://www.aspergillusgenome.org/cache/a_fumigatus_af293_genomesnapshot.html
http://www.aspergillusgenome.org/cache/a_niger_cbs_513_88_genomesnapshot.html

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